Package: doublIn 0.1.0
doublIn: Estimate Incubation or Latency Time using Doubly Interval Censored Observations
Visualize contact tracing data using a 'shiny' app and estimate the incubation or latency time of an infectious disease respecting the following characteristics in the analysis; (i) doubly interval censoring with (partly) overlapping or distinct windows; (ii) an infection risk corresponding to exponential growth; (iii) right truncation allowing for individual truncation times; (iv) different choices concerning the family of the distribution. For our earlier work, we refer to Arntzen et al. (2023) <doi:10.1002/sim.9726>. A paper describing our approach in detail will follow.
Authors:
doublIn_0.1.0.tar.gz
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doublIn.pdf |doublIn.html✨
doublIn/json (API)
# Install 'doublIn' in R: |
install.packages('doublIn', repos = c('https://vharntzen.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/vharntzen/doublin/issues
Last updated 5 months agofrom:b79dcd41f2. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 03 2024 |
R-4.5-win | OK | Nov 03 2024 |
R-4.5-linux | OK | Nov 03 2024 |
R-4.4-win | OK | Nov 03 2024 |
R-4.4-mac | OK | Nov 03 2024 |
R-4.3-win | OK | Nov 03 2024 |
R-4.3-mac | OK | Nov 03 2024 |
Exports:Estimate_doublInPlot_doublInVisualize_contact_tracing_data
Dependencies:askpassassertthatbackportsbase64encbbmlebdsmatrixBHbitbit64blobbroombslibcachemcallrcellrangerclicliprcodacolorspacecommonmarkconflictedcpp11crayoncrosstalkcurldata.tableDBIdbplyrdeSolvedigestdplyrDTdtplyrepicontactsevaluatefansifarverfastGHQuadfastmapflexsurvfontawesomeforcatsfsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshtmlwidgetshttpuvhttridsigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemodelrmstatemStatsmuhazmunsellmvtnormnlmenumDerivopensslpillarpkgconfigplotlyprettyunitsprocessxprogresspromisespspurrrquadprogR6raggrappdirsRColorBrewerRcppRcppArmadilloreadrreadxlrematchrematch2reprexrjagsrlangrmarkdownrstpm2rstudioapirvestsassscalesselectrshinyshinydashboardshinythemesshinyWidgetssourcetoolsstatmodstringistringrsurvivalsyssystemfontstextshapingthreejstibbletidyrtidyselecttidyversetimechangetinytextzdbutf8uuidvctrsviridisLitevisNetworkvroomwithrxfunxml2xtableyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Estimate the incubation or latency time of an infectious disease, i.e. a doubly interval censored time-to-event | Estimate_doublIn |
Plot the incubation or latency time distribution | Plot_doublIn |
Visualize contact tracing data | Visualize_contact_tracing_data |